diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 3a21cdd38..4311cef8d 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -458,8 +458,15 @@ shellcheck:
   extends:
     - .build_on_fedora
   stage: analysis
+  variables:
+    MESON_OPTIONS: >-
+        -Dpipewire-v4l2=enabled
+        -Dpipewire-jack=enabled
   script:
-    - shellcheck $(git grep -l "#\!/.*bin/.*sh")
+    - echo "Configuring with meson options $MESON_OPTIONS"
+    - meson setup "$BUILD_DIR" --prefix="$PREFIX" $MESON_OPTIONS
+    - shellcheck $(git ls-files '*.sh')
+    - shellcheck $(grep -rl "#\!/.*bin/.*sh" "$BUILD_DIR")
 
 spellcheck:
   extends:
diff --git a/doc/input-filter-h.sh b/doc/input-filter-h.sh
index dc4604a79..554837c8c 100755
--- a/doc/input-filter-h.sh
+++ b/doc/input-filter-h.sh
@@ -11,6 +11,7 @@ FILENAME="$1"
 # Add \ingroup commands for the file, for each \addgroup in it
 BASEFILE=$(echo "$FILENAME" | sed -e 's@.*src/pipewire/@pipewire/@; s@.*spa/include/spa/@spa/@; s@.*src/test/@test/@;')
 
+# shellcheck disable=SC2028 # \file is not an escape sequence
 echo "/** \file"
 echo "\`$BASEFILE\`"
 sed -n -e '/.*\\addtogroup [a-zA-Z0-9_].*/ { s/.*addtogroup /\\ingroup /; p; }' < "$FILENAME" | sort | uniq
diff --git a/pipewire-jack/src/pw-jack.in b/pipewire-jack/src/pw-jack.in
index 2f232f625..0399f31fa 100755
--- a/pipewire-jack/src/pw-jack.in
+++ b/pipewire-jack/src/pw-jack.in
@@ -52,6 +52,8 @@ if [ -n "$PERIOD" ]; then
 	fi
 	export PIPEWIRE_QUANTUM
 fi
+
+# shellcheck disable=SC2016 # ${LIB} is interpreted by ld.so, not the shell
 LD_LIBRARY_PATH='@LIBJACK_PATH@'"${LD_LIBRARY_PATH+":$LD_LIBRARY_PATH"}"
 export LD_LIBRARY_PATH
 
diff --git a/pipewire-v4l2/src/pw-v4l2.in b/pipewire-v4l2/src/pw-v4l2.in
index 9591bf32f..c02f17dbd 100755
--- a/pipewire-v4l2/src/pw-v4l2.in
+++ b/pipewire-v4l2/src/pw-v4l2.in
@@ -37,6 +37,7 @@ shift $(( OPTIND - 1 ))
 if [ "$PW_UNINSTALLED" = 1 ] ; then
    PW_V4L2_LD_PRELOAD="$PW_BUILDDIR"'/pipewire-v4l2/src/libpw-v4l2.so'
 else
+   # shellcheck disable=SC2016 # ${LIB} is interpreted by ld.so, not the shell
    PW_V4L2_LD_PRELOAD='@LIBV4L2_PATH@/libpw-v4l2.so'
 fi